Posted:1 day ago|
Platform:
On-site
Full Time
Location: On-site — Kochi, Kerala, India
Employment: Full-time (6–12 month contract with potential extension)
Start date: Immediate
We are building a pilot AI system for early cancer detection using advanced computer vision on medical imaging. The goal is to deliver a research-grade prototype that detects and prioritizes clinically relevant findings and integrates with standardized reporting workflows, paving the way for a prospective clinical study.
The Junior Researcher will work on-site and implement an end-to-end pipeline: data curation, preprocessing/DICOM handling, anatomical segmentation, classical candidate generation, 3D deep learning–based detection, evaluation, and a lightweight viewer for reader-in-the-loop assessment. Close mentorship and clear milestones are provided.
- Data curation
- Ingest and organize de-identified imaging studies and associated labels; maintain manifests, provenance, and documentation.
- Structure labels into clinically meaningful size/risk bins; handle noisy/incomplete annotations.
- Algorithm development
- Preprocess volumetric CT data (resampling, denoising, normalization; multi-position alignment where applicable).
- Implement segmentation of relevant anatomy and classical candidate generation to reduce false positives.
- Train a 3D CNN detector on candidate-centered patches with weak/semi-supervised targets; optimize sensitivity for clinically significant findings while controlling false positives per case.
- Optional: add a characterization head (e.g., risk/biologic likelihood) where reliable ground truth exists.
- Evaluation and reporting
- Define robust patient-level splits; compute per-lesion sensitivity by size/risk, false positives per case, and per-case sensitivity.
- Build simple visualization/overlays and generate standardized, clinically aligned summaries for internal review.
- Document methods, code, and results; contribute to an internal white paper and potential abstract.
- B.E./B.Tech/M.Sc./M.Tech in Computer Science, Biomedical Engineering, Data Science, or related fields.
- Hands-on experience with Python, PyTorch/TensorFlow, and medical imaging toolkits (e.g., MONAI, SimpleITK, pydicom).
- Practical knowledge of 3D CNNs/UNet variants, volumetric data pipelines, and GPU training workflows.
- Demonstrated project in medical imaging or volumetric detection/segmentation (GitHub/portfolio or paper).
- Strong experimentation hygiene: Git, reproducible environments, and clear documentation.
- Willingness and ability to work on-site in Kochi, Kerala.
- Experience with CT imaging, anatomical segmentation, or classical computer vision (e.g., curvature-based candidate generation, artifact suppression).
- Familiarity with radiomics and weak/semi-supervised learning for noisy labels.
- Understanding of clinical reporting frameworks and screening metrics.
- Experience building simple viewers (Streamlit/Gradio/ITK widgets) and robust DICOM handling.
- Exposure to data governance for clinical datasets and basic biostatistics.
- Curated and versioned imaging subsets ready for training, with label confidence tracking.
- Baseline candidate generator with segmentation and measurable false-positive reduction.
- 3D detection model achieving high sensitivity for clinically significant findings with controlled false positives per case.
- Clear evaluation on a held-out test set and a lightweight reader-in-the-loop demo.
- Python, PyTorch, MONAI, SimpleITK/pydicom, NumPy/Pandas
- Experiment tracking (Weights & Biases/MLflow), Docker/conda, Git
- Optional: Streamlit/Gradio for viewer, DICOMweb utilities
- Exposure to translational research with potential publication/abstract opportunities.
- Collaborative lab environment, competitive stipend, and performance-based extension.
- Opportunity to impact real-world healthcare workflows.
Include:
- A short paragraph on experience with 3D medical imaging.
- One example of handling noisy or incomplete labels.
- Availability and preferred start date.
- Confirmation of on-site availability in Kochi.
Rolling review; priority for applications received within 2 weeks.
Note: Prior domain-specific experience is a plus but not mandatory—strong fundamentals, curiosity, and grit matter most.
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